Substance

ID:73046

Names and Identifiers
IUPAC Traditional name
SLM
Synonyms
RapamuneSirolimusRapamycin(Sirolimus)
IUPAC name
(1R,9S,12S,15R,16E,18R,19R,21R,23S,24E,26E,28E,30S,32S,35R)-1,18-dihydroxy-12-[(2R)-1-[(1S,3R,4R)-4-hydroxy-3-methoxycyclohexyl]propan-2-yl]-19,30-dimethoxy-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0^{4,9}]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone
Registration numbers
CAS Number
Properties
Safety Information
Storage Condition
-20°C
Product Information
Salt Data
Free Base
Pharmacology Properties
Target
mTOR
Physical Property
Solubility
DMSO
Molecule Details
Research Area
Description
Immunology
Protocol
Kinase Assay [1]
Immunoblotting for the mTOR kinase assay
HEK293 cells are plated at 2-2.5×105 cells/well of a 12-well plate and serum-starved for 24 hours in DMEM. Cells are treated with increasing concentrations of Rapamycin (0.05-50 nM) for 15 minutes at 37 °C. Serum is added to a final concentration of 20% for 30 minutes at 37 °C. Cells are lysed, and cell lysates are separated by SDS-PAGE. Resolved proteins are transferred to a polyvinylidene difluoride membrane and immunoblotted with a phosphospecific primary antibody against Thr-389 of p70 S6 kinase. Data are analyzed using ImageQuant and KaleidaGraph.
Cell Assay [3]
Cell Lines
U87-MG, T98G, and U373-MG
Concentrations
Dissolved in DMSO, final concentrations ~25 μM
Incubation Time
72 hours
Methods

Cells are exposed to various concentrations of Rapamycin for 72 hours. For the assessment of cell viability, cells are collected by trypsinization, stained with trypan blue, and the viable cells in each well are counted. For the determination of cell cycle, cells are trypsinized, fixed with 70% ethanol, and stained with propidium iodide using a flow cytometry reagent set. Samples are analyzed for DNA content using a FACScan flow cytometer and CellQuest software. For apoptosis detection, cells are stained with the terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) technique using an ApopTag apoptosis detection kit. To detect the development of acidic vesicular organelles (AVO), cells are stained with acridine orange (1 μg/mL) for 15 minutes, and examined under a fluorescence microscope. To quantify the development of AVOs, cells are stained with acridine orange (1 μg/mL) for 15 minutes, removed from the plate with trypsin-EDTA, and analyzed using the FACScan flow cytometer and CellQuest software. To analyze the autophagic process, cells are incubated for 10 minutes with 0.05 mM monodansylcadaverine at 37 °C and are then observed under a fluorescence microscope.

Animal Study [7]
Animal Models
Athymic Nu/Nu mice inoculated subcutaneously with VEGF-A-expressing C6 rat glioma cells
Formulation
Dissolved in solvent solution (0.2% carboxymethylcellulose and 0.25% Tween-80 in sterile H2O)
Doses
~4 mg/kg/day
Administration
Injection i.p.
Molecular Spectra
No Data Available
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References
• Phung TL, et al. Cancer Cell, 2006, 10(2), 159-170.
• Kenerson HL, et al. Cancer Res, 2002, 62(20), 5645-5650.
• Edwards SR, et al. J Biol Chem, 2007, 282(18), 13395-13401.
• Barbet NC, et al. Mol Biol Cell, 1996, 7(1), 25-42.
• Bodine SC, et al. Nat Cell Biol, 2001, 3(11), 1014-1019.
• Takeuchi H, et al. Cancer Res, 2005, 65(8), 3336-3346.
• Guba M, et al. Nat Med, 2002, 8(2), 128-135.