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Molecule
ID:2631
Structure
Similarity
Functional Group
Text
General Information
Structure
Molecular Formula
C₁₂H₁₆N₂O₄
Molecular Mass
252.26644
Exact Mass
252.111007
Charge
0
InChI
InChI=1S/C12H16N2O4/c1-6-4-14(11(18)13-10(6)17)12-2-8(12)7(5-15)9(16)3-12/h4,7-9,15-16H,2-3,5H2,1H3,(H,13,17,18)/t7-,8-,9-,12-/m0/s1
InChIKey
XRMLXZVSFIBRRJ-PEFMBERDSA-N
Canonic Smiles
OC[C@@H]1[C@@H](O)C[C@@]2([C@H]1C2)n1cc(C)c(=O)[nH]c1=O
Isomeric Smiles
Cc1cn(c(=O)[nH]c1=O)[C@@]12C[C@H](O)[C@@H](CO)[C@@H]1C2
Calculated Properties
JChem
LogD (pH = 7.4)
-1.56
LogD (pH = 5.5)
-1.56
Log P
-1.56
Rotatable Bonds
2
H Donor
3
H Acceptors
4
Lipinski's Rule of Five
true
Acid pKa
10.30
Polar Surface Area
89.87
Polarizability
25.44
Molar Refractivity
62.19
LOG S
-1.46
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General Information
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Academic Data
DrugBank
DB02921
PubChem
447628
ChEBI
CHEBI:45586
Names and Identifiers
Synonyms
(South)-Methanocarba-Thymidine
south-methanocarbathymidine
1-[(1S,3S,4R,5S)-3-hydroxy-4-(hydroxymethyl)bicyclo[3.1.0]hexan-1-yl]thymine
(1S,3S,4R,5S)-3-hydroxy-4-hydroxymethyl-1-(5-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)bicyclo[3.1.0]hexane
IUPAC name
1-[(1S,3S,4R,5S)-3-hydroxy-4-(hydroxymethyl)bicyclo[3.1.0]hexan-1-yl]-5-methyl-1,2,3,4-tetrahydropyrimidine-2,4-dione
IUPAC Traditional name
@(south)-methanocarba-thymidine
south-methanocarbathymidine
Registration numbers
PubChem SID
160966080
46504656
125258703
PubChem CID
447628
PDBeChem Database
SCT
Protein Data Bank
1of1
CHEBI ID
CHEBI:45586
PubMed Citation Links
15163659
Reaxys Registry
6930384
Related Proteins
PDB Bank
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1OF1
Molecule Details
DrugBank
DB02921
Drug information: experimental
ChEBI
CHEBI:45586
A carbobicyclic compound that is bicyclo[3.1.0]hexane which is substituted at the 1-pro-S, 3-pro-S, and 4-pro-R positions by thymin-1-yl, hydroxy, and hydroxymethyl groups, respectively.
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