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Molecule
ID:133603
Structure
Similarity
Functional Group
Text
General Information
Structure
Molecular Formula
C₁₀H₁₄N₂O₆
Molecular Mass
258.22796
Exact Mass
258.08518618
Charge
0
InChI
InChI=1S/C10H14N2O6/c13-3-5-2-12(10(17)11-9(5)16)8-1-6(15)7(4-14)18-8/h2,6-8,13-15H,1,3-4H2,(H,11,16,17)
InChIKey
IPAVKOYJGUMINP-UHFFFAOYSA-N
Canonic Smiles
OCC1OC(CC1O)n1cc(CO)c(=O)[nH]c1=O
Isomeric Smiles
c1c(c(=O)[nH]c(=O)n1C1CC(C(O1)CO)O)CO
Calculated Properties
JChem
Acid pKa
9.590579
H Acceptors
6
H Donor
4
LogD (pH = 5.5)
-2.3998597
LogD (pH = 7.4)
-2.402584
Log P
-2.3998249
Molar Refractivity
57.1867
Polarizability
22.704432
Polar Surface Area
119.33
Rotatable Bonds
3
Lipinski's Rule of Five
true
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Data Source
Academic Data
PubChem
5201346
Commercial Catalog
Sigma Aldrich
H8631
Names and Identifiers
Synonyms
HMdUdr
5-Hydroxymethyl-2′-deoxyuridine
5-HMdU
IUPAC name
1-[4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-(hydroxymethyl)-1,2,3,4-tetrahydropyrimidine-2,4-dione
IUPAC Traditional name
1-[4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-(hydroxymethyl)-3H-pyrimidine-2,4-dione
Registration numbers
EC Number
225-848-0
CAS Number
5116-24-5
MDL Number
MFCD00047489
PubChem SID
24895526
162227880
PubChem CID
5201346
Properties
Safety Information
German water hazard class
3
Source
Storage Temperature
-20°C
Source
Personal Protective Equipment
Eyeshields, Gloves, type N95 (US), type P1 (EN143) respirator filter
Source
Product Information
Purity
≥95% (HPLC)
Source
Molecule Details
Sigma Aldrich
H8631
Application
5-Hydroxymethyl-2′-deoxyuridine (HMdUdr) is a used as a marker for oxidative nucleic acid (DNA) damage. HMdUdr may be used as an antigen to create anti-HMdUdr antibodies.
References
PubChem Literature
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Bioactivity
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