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Molecule
ID:125499
Structure
Similarity
Functional Group
Text
General Information
Structure
Molecular Formula
C₁₀H₁₅N₃O₅
Molecular Mass
257.2432
Exact Mass
257.1011706
Charge
0
InChI
InChI=1S/C10H15N3O5/c1-4-2-13(10(17)12-8(4)11)9-7(16)6(15)5(3-14)18-9/h2,5-7,9,14-16H,3H2,1H3,(H2,11,12,17)/t5-,6-,7-,9-/m1/s1
InChIKey
ZAYHVCMSTBRABG-JXOAFFINSA-N
Canonic Smiles
OC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cc(C)c(nc1=O)N
Isomeric Smiles
O=c1nc(N)c(cn1[C@@H]1O[C@@H]([C@@H](O)[C@H]1O)CO)C
Calculated Properties
JChem
LogD (pH = 7.4)
-2.40
LogD (pH = 5.5)
-2.40
Log P
-2.40
Rotatable Bonds
2
H Donor
4
H Acceptors
7
Lipinski's Rule of Five
true
Acid pKa
2.72
Polar Surface Area
128.61
Polarizability
24.39
Molar Refractivity
58.90
LOG S
-0.82
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5-Methylcytidine
PubChem
92918
ChEBI
CHEBI:20607
Commercial Catalog
Sigma Aldrich
M4254
859877
Names and Identifiers
IUPAC name
4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-1,2-dihydropyrimidin-2-one
IUPAC Traditional name
5-methylcytidine
Synonyms
m
5
C
5-Methylcytidine
5-甲基胞苷
5-Methylcytidine
5-methylcytidine
Registration numbers
PubChem SID
24896915
162219849
29214844
CAS Number
2140-61-6
EC Number
218-390-8
MDL Number
MFCD00006548
Wikipedia Title
5-Methylcytidine
Chemspider ID
83877
PubChem CID
92918
SureChEMBL Database
SCHEMBL41572
MetaboLights Database
MTBLS697
MTBLS570
MTBLS49
MTBLS121
MTBLS2406
MTBLS1801
MTBLS2145
MTBLS159
MTBLS680
MTBLS186
MTBLS630
MTBLS181
MTBLS3306
MTBLS135
MTBLS1693
MTBLS106
MTBLS301
MTBLS751
MTBLS682
MTBLS413
MTBLS533
MTBLS2081
MTBLS3927
MTBLS138
MTBLS3786
CHEBI ID
CHEBI:20607
UniProt Database
Q9HA47
Q9QYG8
P52623
Q99PM9
Q9BZX2
CHEMBL
CHEMBL72086
Beilstein Number
89657
Properties
Product Information
Purity
≥99%
Source
99%
Source
Empirical Formula (Hill Notation)
C10H15N3O5
Source
Safety Information
German water hazard class
3
Source
MSDS Link
Download link
Source
Physical Property
Melting Point
212-215 °C (dec.)(lit.)
Source
Molecule Details
Wikipedia
5-Methylcytidine
Sigma Aldrich
M4254
Application
5-Methylcytidine is used in studies of DNA methylation processes (epigenetics).
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Bioactivity
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Chemspider ID
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SureChEMBL Database
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MetaboLights Database
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CHEBI ID
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UniProt Database
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CHEMBL
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Beilstein Number